createReport |
Create report of RNAseq DEG anlaysis |
degBI |
Get the estimates of the fold change (FC) mean from a FC distribution using bayesian inference |
degBIcmd |
Apply bayesian inference to estimate the average fold change (FC) of a distribution |
degComb |
Get random combinations of two groups |
degFC |
get the FC for each gene between two groups |
degMB |
Distribution of expression of DE genes compared to the background |
degMean |
Distribution of pvalues by expression range |
degMV |
Correlation of the standard desviation and the mean of the abundance of a set of genes. |
degNcomb |
Get number of potential combinations of two vectors |
degObj |
Create a deg object that can be used to plot expression values at shiny server:runGist(9930881) |
degPR |
plot the correlation between the rank according estimator and the rank according FC |
degRank |
Get rank data frame with best score on the top |
DEGreportSet |
list object for DE genes betwen Male and Females |
degVar |
Distribution of pvalues by standard desviation range |
degVB |
Distribution of the standard desviation of DE genes compared to the background |
figurebyexp |
Wrap figure from 'degMB' into a Nozzle object |
figurebyvar |
Wrap figure from 'degVB' into a Nozzle object |
figurepvaluebyexp |
Wrap figure from 'degMean' into a Nozzle object |
figurepvaluebyvar |
Wrap figure from 'degVar' into a Nozzle object |
figurepvaluebyvarexp |
Wrap figure from 'degMV' into a Nozzle object |
figurerank |
Wrap figure from 'plotrank' into a Nozzle object |
geneInfo |
data.frame with chromose information for each gene |
humanSexDEedgeR |
edgeR object for DE genes betwen Male and Females |
tablerank |
Create table for Nozzle report |