Clonality testing


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Documentation for package ‘Clonality’ version 1.14.0

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Clonality-package Clonality testing
ave.adj.probes Averaging of adjacent probes in copy number arrays
chromosomePlots Per-chromosome plots of the copy number arrays from a particular patient
Clonality Clonality testing
clonality.analysis Clonality testing using copy number data
ECMtesting Clonality testing of >=3 tumors using Extended Concordant Mutations (ECM) test based on LOH (Loss of Heterozygosity) profiles
genomewidePlots Plot of the genomewide copy number profiles of a pair of tumors.
histogramPlot Histrograms of Log-Likelihood Ratios
LOHclonality Clonality testing using LOH (Loss of Heterozygosity) profiles
LRtesting3or4tumors Clonality testing of 3 or 4 tumors using Likelihood model based on LOH (Loss of Heterozygosity) profiles
splitChromosomes Chromosome splitting