CRISPRseek-package | Design of target-specific guide RNAs (gRNAs) in CRISPR-Cas9, genome-editing systems |
buildFeatureVectorForScoring | Build feature vectors |
calculategRNAEfficiency | Calculate gRNA Efficiency |
compare2Sequences | Compare 2 input sequences/sequence sets for possible guide RNAs (gRNAs) |
CRISPRseek | Design of target-specific guide RNAs (gRNAs) in CRISPR-Cas9, genome-editing systems |
filtergRNAs | Filter gRNAs |
filterOffTarget | filter off targets and generate reports. |
findgRNAs | Find potential gRNAs |
getOfftargetScore | Calculate score for each off target |
offTargetAnalysis | Design of target-specific guide RNAs for CRISPR-Cas9 system in one function |
searchHits | Search for off targets |
translatePattern | translate pattern from IUPAC Extended Genetic Alphabet to regular expression |
writeHits | Write the hits of sequence search to a file |