r3Cseq

Analysis of Chromosome Conformation Capture and Next-generation Sequencing (3C-seq)

Bioconductor version: 2.9

This package is an implementation of data analysis for the long-range interactions from 3C-seq assay.

Author: Supat Thongjuea, Bergen Center for Computational Science, Norway <supat.thongjuea at bccs.uib.no>

Maintainer: Supat Thongjuea <supat.thongjuea at bccs.uib.no>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("r3Cseq")

To cite this package in a publication, start R and enter:

    citation("r3Cseq")

Documentation

PDF R Script r3Cseq
PDF   Reference Manual

Details

biocViews Preprocessing, Sequencing, HighThroughputSequencing
Depends R (>= 2.14.0), IRanges, BSgenome, ShortRead, rtracklayer, RColorBrewer, methods
Imports
Suggests BSgenome.Mmusculus.UCSC.mm9
System Requirements
License GPL-3
URL
Depends On Me
Imports Me
Suggests Me
Version 1.0.0
Since Bioconductor 2.9 (R-2.14)

Package Downloads

Package Source r3Cseq_1.0.0.tar.gz
Windows Binary r3Cseq_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary r3Cseq_1.0.0.tgz
Package Downloads Report Download Stats

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Fred Hutchinson Cancer Research Center