plier
Implements the Affymetrix PLIER algorithm
Bioconductor version: 2.9
The PLIER (Probe Logarithmic Error Intensity Estimate) method produces an improved signal by accounting for experimentally observed patterns in probe behavior and handling error at the appropriately at low and high signal values.
Author: Affymetrix Inc., Crispin J Miller, PICR
Maintainer: Crispin Miller <cmiller at picr.man.ac.uk>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("plier")
To cite this package in a publication, start R and enter:
citation("plier")
Documentation
| Reference Manual | ||
| Text | README |
Details
| biocViews | Software |
| Depends | R (>= 2.0), methods |
| Imports | affy, Biobase, methods |
| Suggests | |
| System Requirements | |
| License | GPL (>= 2) |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.24.0 |
| Since | Bioconductor 1.6 (R-2.1) or earlier |
Package Downloads
| Package Source | plier_1.24.0.tar.gz |
| Windows Binary | plier_1.24.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | plier_1.24.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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