pcot2
Principal Coordinates and Hotelling's T-Square method
Bioconductor version: 2.9
PCOT2 is a permutation-based method for investigating changes in the activity of multi-gene networks. It utilizes inter-gene correlation information to detect significant alterations in gene network activities. Currently it can be applied to two-sample comparisons.
Author: Sarah Song, Mik Black
Maintainer: Sarah Song <qson003 at stat.auckland.ac.nz>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("pcot2")
To cite this package in a publication, start R and enter:
citation("pcot2")
Documentation
| HowToUseGeneLocator.pdf | ||
| R Script | PCOT2 Vignette | |
| Reference Manual |
Details
| biocViews | Microarray, DifferentialExpression |
| Depends | R (>= 2.0.0), grDevices, Biobase, amap |
| Imports | |
| Suggests | multtest, hu6800.db, KEGG.db, mvtnorm |
| System Requirements | |
| License | GPL (>= 2) |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.22.0 |
| Since | Bioconductor 1.9 (R-2.4) |
Package Downloads
| Package Source | pcot2_1.22.0.tar.gz |
| Windows Binary | pcot2_1.22.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | pcot2_1.22.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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