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pathRender
Render molecular pathways
Bioconductor version: 2.9
build graphs from pathway databases, render them by Rgraphviz
Author: Li Long <lilong at isb-sib.ch>
Maintainer: Li Long <lilong at isb-sib.ch>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("pathRender")
To cite this package in a publication, start R and enter:
citation("pathRender")
Documentation
| R Script | pathRender overview | |
| R Script | pathway graphs colored by expression map | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | GraphsAndNetworks |
| Depends | graph, Rgraphviz, RColorBrewer, cMAP, AnnotationDbi, methods |
| Imports | |
| Suggests | ALL, hgu95av2.db |
| System Requirements | |
| License | LGPL |
| URL | http://www.bioconductor.org |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.22.0 |
| Since | Bioconductor 1.8 (R-2.3) |
Package Downloads
| Package Source | pathRender_1.22.0.tar.gz |
| Windows Binary | pathRender_1.22.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | pathRender_1.22.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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