pathRender

Render molecular pathways

Bioconductor version: 2.9

build graphs from pathway databases, render them by Rgraphviz

Author: Li Long <lilong at isb-sib.ch>

Maintainer: Li Long <lilong at isb-sib.ch>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("pathRender")

To cite this package in a publication, start R and enter:

    citation("pathRender")

Documentation

PDF R Script pathRender overview
PDF R Script pathway graphs colored by expression map
PDF   Reference Manual
Text   NEWS

Details

biocViews GraphsAndNetworks
Depends graph, Rgraphviz, RColorBrewer, cMAP, AnnotationDbi, methods
Imports
Suggests ALL, hgu95av2.db
System Requirements
License LGPL
URL http://www.bioconductor.org
Depends On Me
Imports Me
Suggests Me
Version 1.22.0
Since Bioconductor 1.8 (R-2.3)

Package Downloads

Package Source pathRender_1.22.0.tar.gz
Windows Binary pathRender_1.22.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary pathRender_1.22.0.tgz
Package Downloads Report Download Stats

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