graphs and sparse matrices for working with ontologies; formal objects for nomenclatures with provenance management

Bioconductor version: 2.9

tools for working with ontologies and graphs

Author: Vince Carey <stvjc at channing.harvard.edu>

Maintainer: Vince Carey <stvjc at channing.harvard.edu>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF demoComp.pdf
PDF R Script ontoTools archived data
PDF R Script ontoTools Primer
PDF R Script ontoTools: sgdiOntology
PDF prot2.pdf
PDF protlk.pdf
PDF   Reference Manual


biocViews GraphsAndNetworks, Infrastructure
Depends R (>= 2.4.0), methods, graph, Biobase(>= 2.5.5), AnnotationDbi, SparseM, GO.db, annotate
Suggests combinat, Iyer517, org.Hs.eg.db, KEGG.db
System Requirements
License GPL-2
Depends On Me
Imports Me
Suggests Me
Version 1.32.0
Since Bioconductor 1.6 (R-2.1) or earlier

Package Downloads

Package Source ontoTools_1.32.0.tar.gz
Windows Binary ontoTools_1.32.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary ontoTools_1.32.0.tgz
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