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ontoTools
graphs and sparse matrices for working with ontologies; formal objects for nomenclatures with provenance management
Bioconductor version: 2.9
tools for working with ontologies and graphs
Author: Vince Carey <stvjc at channing.harvard.edu>
Maintainer: Vince Carey <stvjc at channing.harvard.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("ontoTools")
To cite this package in a publication, start R and enter:
citation("ontoTools")
Documentation
| demoComp.pdf | ||
| R Script | ontoTools archived data | |
| R Script | ontoTools Primer | |
| R Script | ontoTools: sgdiOntology | |
| prot2.pdf | ||
| protlk.pdf | ||
| Reference Manual |
Details
| biocViews | GraphsAndNetworks, Infrastructure |
| Depends | R (>= 2.4.0), methods, graph, Biobase(>= 2.5.5), AnnotationDbi, SparseM, GO.db, annotate |
| Imports | |
| Suggests | combinat, Iyer517, org.Hs.eg.db, KEGG.db |
| System Requirements | |
| License | GPL-2 |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.32.0 |
| Since | Bioconductor 1.6 (R-2.1) or earlier |
Package Downloads
| Package Source | ontoTools_1.32.0.tar.gz |
| Windows Binary | ontoTools_1.32.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | ontoTools_1.32.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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