nucleR
Nucleosome positioning package for R
Bioconductor version: 2.9
Nucleosome positioning for Tiling Arrays and Next Generation Sequencing Experiments
Author: Oscar Flores, David Rossell
Maintainer: Oscar Flores <oflores at mmb.pcb.ub.es>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("nucleR")
To cite this package in a publication, start R and enter:
citation("nucleR")
Documentation
| R Script | Quick analysis of nucleosome positioning experiments | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | ChIPseq, Microarray, Sequencing, Genetics, HighThroughputSequencing |
| Depends | methods, IRanges, ShortRead, Biobase |
| Imports | Biobase, GenomicRanges, graphics, IRanges, methods, ShortRead, stats |
| Suggests | |
| System Requirements | |
| License | LGPL (>= 3) |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.0.0 |
| Since | Bioconductor 2.9 (R-2.14) |
Package Downloads
| Package Source | nucleR_1.0.0.tar.gz |
| Windows Binary | nucleR_1.0.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | nucleR_1.0.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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