mzR

parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data)

Bioconductor version: 2.9

mzR provides a unified API to the common file formats and parsers available for mass spectrometry data. It comes with a wrapper for the ISB random access parser for mass spectrometry mzXML, mzData and mzML files. The package contains the original code written by the ISB, and a subset of the proteowizard library for mzML. The netCDF reading code has previously been used in XCMS.

Author: Bernd Fischer, Steffen Neumann, Laurent Gatto

Maintainer: Bernd Fischer <bernd.fischer at embl.de>, Steffen Neumann <sneumann at ipb-halle.de>, Laurent Gatto <lg390 at cam.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("mzR")

To cite this package in a publication, start R and enter:

    citation("mzR")

Documentation

Details

Package Downloads