mcaGUI
Microbial Community Analysis GUI
Bioconductor version: 2.9
Microbial community analysis GUI for R using gWidgets.
Author: Wade K. Copeland, Vandhana Krishnan, Daniel Beck, Matt Settles, James Foster, Kyu-Chul Cho, Mitch Day, Roxana Hickey, Ursel M.E. Schutte, Xia Zhou, Chris Williams, Larry J. Forney, Zaid Abdo, Poor Man's GUI (PMG) base code by John Verzani with contributions by Yvonnick Noel
Maintainer: Wade K. Copeland <wade at kingcopeland.com>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("mcaGUI")
To cite this package in a publication, start R and enter:
citation("mcaGUI")
Documentation
| An_Introduction_and_User_Guide_for_mcaGUI.pdf | ||
| Reference Manual | ||
| Text | README |
Details
| biocViews | GUI, Visualization, Bioinformatics, Clustering, Sequencing |
| Depends | lattice, MASS, proto, foreign, gWidgets(>= 0.0-36), gWidgetsRGtk2(>= 0.0-53), OTUbase, vegan, bpca |
| Imports | |
| Suggests | |
| System Requirements | |
| License | GPL (>= 2) |
| URL | http://www.ibest.uidaho.edu/ibest/index.php |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.2.0 |
| Since | Bioconductor 2.8 (R-2.13) |
Package Downloads
| Package Source | mcaGUI_1.2.0.tar.gz |
| Windows Binary | mcaGUI_1.2.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | mcaGUI_1.2.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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