mBPCR
Bayesian Piecewise Constant Regression for DNA copy number estimation
Bioconductor version: 2.9
Estimates the DNA copy number profile using mBPCR to detect regions with copy number changes
Author: P.M.V. Rancoita <paola at idsia.ch>, with contributions from M. Hutter <marcus.hutter at anu.edu.au>
Maintainer: P.M.V. Rancoita <paola at idsia.ch>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("mBPCR")
To cite this package in a publication, start R and enter:
citation("mBPCR")
Documentation
| R Script | mBPCR | |
| Reference Manual |
Details
| biocViews | aCGH, SNP, Microarray, CopyNumberVariants, Bioinformatics |
| Depends | oligoClasses, SNPchip |
| Imports | Biobase |
| Suggests | xtable |
| System Requirements | |
| License | GPL (>= 2) |
| URL | http://www.idsia.ch/~paola/mBPCR |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.8.0 |
| Since | Bioconductor 2.5 (R-2.10) |
Package Downloads
| Package Source | mBPCR_1.8.0.tar.gz |
| Windows Binary | mBPCR_1.8.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | mBPCR_1.8.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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