Quality Control, Visualization and Processing for High-Throughput Sequencing data

Bioconductor version: 2.9

We provide efficient, easy-to-use tools for High-Throughput Sequencing (ChIP-seq, RNAseq etc.). These include MDS plots (analogues to PCA), detecting inefficient immuno-precipitation or over-amplification artifacts, tools to identify and test for genomic regions with large accumulation of reads, and visualization of coverage profiles.

Author: Evarist Planet, Camille Stephan-Otto, Oscar Reina, Oscar Flores, David Rossell

Maintainer: Oscar Reina <oscar.reina at>

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PDF R Script Manual for the htSeqTools library
PDF   Reference Manual
Text   NEWS


biocViews HighThroughputSequencing, QualityControl
Depends R (>= 2.12.2), Biobase, IRanges, methods, MASS, BSgenome, GenomicRanges
System Requirements
License GPL (>=2)
Depends On Me
Imports Me
Suggests Me
Version 1.0.0
Since Bioconductor 2.9 (R-2.14)

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Package Source htSeqTools_1.0.0.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) binary htSeqTools_1.0.0.tgz
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Fred Hutchinson Cancer Research Center