Prediction of KEGG pathway membership for individual genes based on InterPro domain signatures

Bioconductor version: 2.9

The package takes a list of genes and predicts to which KEGG pathway each gene maps to. This is done by looking at the InterPro domains of each gene. Each prediction is assigned a confidence score. The package also allows to predict connected component membership of genes within signaling pathways. Separate models for each organism supported by KEGG can be trained.

Author: Holger Froehlich <frohlich at>

Maintainer: Holger Froehlich <frohlich at>

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PDF R Script gene2pathway
PDF   Reference Manual


biocViews Microarray, Bioinformatics, Classification, GraphsAndNetworks, Pathways
Depends R (>= 2.10.0), kernlab (>= 0.9), biomaRt(>= 1.12.1), KEGGSOAP(>= 1.12.0), RBGL, AnnotationDbi,, keggorthology(>= 2.0)
Imports SSOAP, RCurl
System Requirements
License GPL (>= 2)
Depends On Me
Imports Me
Suggests Me
Version 2.6.0
Since Bioconductor 2.4 (R-2.9)

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Package Source gene2pathway_2.6.0.tar.gz
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MacOS 10.5 (Leopard) binary gene2pathway_2.6.0.tgz
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