gaggle
Broadcast data between R and Gaggle
Bioconductor version: 2.9
This package contains functions enabling data exchange between R and Gaggle enabled bioinformatics software, including Cytoscape, Firegoose and Gaggle Genome Browser.
Author: Paul Shannon <pshannon at systemsbiology.org>
Maintainer: Christopher Bare <cbare at systemsbiology.org>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("gaggle")
To cite this package in a publication, start R and enter:
citation("gaggle")
Documentation
| R Script | Gaggle Overview | |
| Reference Manual |
Details
| biocViews | Visualization, Annotation, GraphsAndNetworks, DataImport |
| Depends | R (>= 2.3.0), rJava (>= 0.4), graph(>= 1.10.2), RUnit (>= 0.4.17) |
| Imports | |
| Suggests | |
| System Requirements | |
| License | GPL version 2 or newer |
| URL | http://gaggle.systemsbiology.net/docs/geese/r/ |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.22.0 |
| Since | Bioconductor 1.9 (R-2.4) |
Package Downloads
| Package Source | gaggle_1.22.0.tar.gz |
| Windows Binary | gaggle_1.22.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | gaggle_1.22.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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