flowWorkspace

Import flowJo Workspaces into BioConductor and replicate flowJo gating with flowCore

Bioconductor version: 2.9

This package is designed to facilitate comparison of automated gating methods against manual gating done in flowJo. This package allows you to import basic flowJo workspaces into BioConductor and replicate the gating from flowJo using the flowCore functionality. Gating hierarchies, groups of samples, compensation, and transformation are performed so that the output matches the flowJo analysis.

Author: Greg Finak, Mike Jiang, Mose Andre

Maintainer: Greg Finak <gfinak at fhcrc.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("flowWorkspace")

To cite this package in a publication, start R and enter:

    citation("flowWorkspace")

Documentation

PDF R Script Importing flowJo Workspaces into R
PDF   Reference Manual
Text   NEWS

Details

biocViews FlowCytometry, DataImport, Preprocessing, DataRepresentation
Depends methods, RBGL, graph, XML, flowCore, flowViz, Rgraphviz, Biobase, IDPmisc
Imports Biobase, Rgraphviz, XML, flowCore, graph, graphics, lattice, methods, stats, utils
Suggests testthat, flowWorkspaceData
System Requirements
License Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me
Version 1.0.2
Since Bioconductor 2.9 (R-2.14)

Package Downloads

Package Source flowWorkspace_1.0.2.tar.gz
Windows Binary flowWorkspace_1.0.2.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary flowWorkspace_1.0.2.tgz
Package Downloads Report Download Stats

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