flowQ
Quality control for flow cytometry
Bioconductor version: 2.9
Provides quality control and quality assessment tools for flow cytometry data.
Author: R. Gentleman, F. Hahne, J. Kettman, N. Le Meur, N. Gopalakrishnan
Maintainer: F. Hahne <florian.hahne at novartis.com>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("flowQ")
To cite this package in a publication, start R and enter:
citation("flowQ")
Documentation
| R Script | Basic Functions for Flow Cytometry Data | |
| R Script | Data Quality Assesment for Ungated Flow Cytometry Data | |
| flowQStructure.pdf | ||
| stainInfo.pdf | ||
| Reference Manual |
Details
| biocViews | Infrastructure, Flowcytometry, CellBasedAssays |
| Depends | R (>= 2.10.0), outliers, lattice, flowViz, methods, mvoutlier, bioDist, parody, RColorBrewer, latticeExtra |
| Imports | geneplotter, flowCore, flowViz, IRanges |
| Suggests | flowStats |
| System Requirements | ImageMagick |
| License | Artistic-2.0 |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.14.1 |
| Since | Bioconductor 2.2 (R-2.7) |
Package Downloads
| Package Source | flowQ_1.14.1.tar.gz |
| Windows Binary | flowQ_1.14.1.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | flowQ_1.14.1.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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