cummeRbund

cummeRbund: The finishing touch on your Tuxedo workflow. Analysis, exploration, manipulation, and visualization of Cufflinks HTS data.

Bioconductor version: 2.9

Allows for persistent storage, access, exploration, and manipulation of Cufflinks high-throughput sequencing data. In addition, provides numerous plotting functions for commonly used visualizations.

Author: L. Goff, C. Trapnell

Maintainer: Loyal A. Goff <lgoff at csail.mit.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("cummeRbund")

To cite this package in a publication, start R and enter:

    citation("cummeRbund")

Documentation

PDF	R Script	An R package for visualization and analysis of Cufflinks high-throughput sequencing data
PDF		cuffData_schema.pdf
PDF		Reference Manual
Text		README
Text		NEWS

Details

biocViews	HighThroughputSequencing, HighThroughputSequencingData, RNAseq, RNAseqData, GeneExpression, DifferentialExpression, Infrastructure, DataImport, DataRepresentation, Visualization, Bioinformatics, Clustering, MultipleComparisons, QualityControl
Depends	R (>= 2.7.0), RSQLite, reshape, ggplot2
Imports	methods
Suggests
System Requirements
License	Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me
Version	1.0.0
Since	Bioconductor 2.9 (R-2.14)

Package Downloads

Package Source	cummeRbund_1.0.0.tar.gz
Windows Binary	cummeRbund_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	cummeRbund_1.0.0.tgz
Package Downloads Report	Download Stats

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