copa
Functions to perform cancer outlier profile analysis.
Bioconductor version: 2.9
COPA is a method to find genes that undergo recurrent fusion in a given cancer type by finding pairs of genes that have mutually exclusive outlier profiles.
Author: James W. MacDonald
Maintainer: James W. MacDonald <jmacdon at med.umich.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("copa")
To cite this package in a publication, start R and enter:
citation("copa")
Documentation
| R Script | copa Overview | |
| Reference Manual |
Details
| biocViews | OneChannel, TwoChannel, DifferentialExpression, Visualization |
| Depends | Biobase, methods |
| Imports | |
| Suggests | colonCA |
| System Requirements | |
| License | Artistic-2.0 |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.22.0 |
| Since | Bioconductor 1.8 (R-2.3) |
Package Downloads
| Package Source | copa_1.22.0.tar.gz |
| Windows Binary | copa_1.22.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | copa_1.22.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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