Annotation of Genetic Variants

Bioconductor version: 2.9

Annotate variants with respect to location and amino acid coding

Author: Michael Lawrence and Valerie Obenchain

Maintainer: Valerie Obenchain <vobencha at>

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PDF R Script Introduction to VariantAnnotation
PDF   Reference Manual
Text   NEWS


biocViews DataImport, Sequencing, HighThroughputSequencing, SNP, AnnotationData, Genetics, Homo_sapiens
Depends methods, R (>= 2.8.0), GenomicRanges, Biostrings, AnnotationDbi, Rsamtools
Imports AnnotationDbi, Biobase, BSgenome, GenomicFeatures, IRanges(>= 1.11.17), snpStats, DBI
Suggests RUnit, BSgenome.Hsapiens.UCSC.hg18, TxDb.Hsapiens.UCSC.hg18.knownGene, SNPlocs.Hsapiens.dbSNP.20090506, TxDb.Dmelanogaster.UCSC.dm3.ensGene, BSgenome.Dmelanogaster.UCSC.dm3, PolyPhen.Hsapiens.dbSNP131, SIFT.Hsapiens.dbSNP132
System Requirements
License Artistic-2.0
Depends On Me PolyPhen.Hsapiens.dbSNP131, SIFT.Hsapiens.dbSNP132
Imports Me
Suggests Me
Version 1.0.5
Since Bioconductor 2.9 (R-2.14)

Package Downloads

Package Source VariantAnnotation_1.0.5.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) binary VariantAnnotation_1.0.5.tgz
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