Transcription Start Site Identification

Bioconductor version: 2.9

Identify and normalize transcription start sites in high-throughput sequencing data.

Author: Clemens Kreutz, Julian Gehring

Maintainer: Julian Gehring <julian.gehring at embl.de>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script Introduction to the TSSi package: Identification of Transcription Start Sites
PDF   Reference Manual


biocViews Sequencing, HighThroughputSequencing, RNAseq, Genetics, Preprocessing
Depends R (>= 2.13.2)
Imports methods, Hmisc, minqa, stats, Biobase, plyr, IRanges
Suggests rtracklayer
System Requirements
License GPL-3
URL http://julian-gehring.github.com/TSSi/
Depends On Me
Imports Me
Suggests Me
Version 1.0.0
Since Bioconductor 2.9 (R-2.14)

Package Downloads

Package Source TSSi_1.0.0.tar.gz
Windows Binary TSSi_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary TSSi_1.0.0.tgz
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