AmiGO visualize R interface

Bioconductor version: 2.9

R interface sending requests to AmiGO visualize, retrieving DAG GO trees, parsing GraphViz DOT format files and exporting GML files for Cytoscape. Also uses RCytoscape to interactively display AmiGO trees in Cytoscape.

Author: Markus Schroeder, Daniel Gusenleitner, Aedin Culhane, Benjamin Haibe-Kains, John Quackenbush

Maintainer: Markus Schroeder <mschroed at jimmy.harvard.edu>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script RamiGO: An Introduction (HowTo)
PDF   Reference Manual


biocViews GO, Visualization, GraphsAndNetworks, Classification
Depends gsubfn, methods
Imports igraph, RCurl, png, RCytoscape, graph
System Requirements
License Artistic-2.0
Depends On Me
Imports Me
Suggests Me
Version 1.0.0
Since Bioconductor 2.9 (R-2.14)

Package Downloads

Package Source RamiGO_1.0.0.tar.gz
Windows Binary RamiGO_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary RamiGO_1.0.0.tgz
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