RamiGO
AmiGO visualize R interface
Bioconductor version: 2.9
R interface sending requests to AmiGO visualize, retrieving DAG GO trees, parsing GraphViz DOT format files and exporting GML files for Cytoscape. Also uses RCytoscape to interactively display AmiGO trees in Cytoscape.
Author: Markus Schroeder, Daniel Gusenleitner, Aedin Culhane, Benjamin Haibe-Kains, John Quackenbush
Maintainer: Markus Schroeder <mschroed at jimmy.harvard.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("RamiGO")
To cite this package in a publication, start R and enter:
citation("RamiGO")
Documentation
| R Script | RamiGO: An Introduction (HowTo) | |
| Reference Manual |
Details
| biocViews | GO, Visualization, GraphsAndNetworks, Classification |
| Depends | gsubfn, methods |
| Imports | igraph, RCurl, png, RCytoscape, graph |
| Suggests | |
| System Requirements | |
| License | Artistic-2.0 |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.0.0 |
| Since | Bioconductor 2.9 (R-2.14) |
Package Downloads
| Package Source | RamiGO_1.0.0.tar.gz |
| Windows Binary | RamiGO_1.0.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | RamiGO_1.0.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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