RDRToolbox

A package for nonlinear dimension reduction with Isomap and LLE.

Bioconductor version: 2.9

A package for nonlinear dimension reduction using the Isomap and LLE algorithm. It also includes a routine for computing the Davis-Bouldin-Index for cluster validation, a plotting tool and a data generator for microarray gene expression data and for the Swiss Roll dataset.

Author: Christoph Bartenhagen

Maintainer: Christoph Bartenhagen <christoph.bartenhagen at ukmuenster.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("RDRToolbox")

To cite this package in a publication, start R and enter:

    citation("RDRToolbox")

Documentation

PDF	R Script	A package for nonlinear dimension reduction with Isomap and LLE.
PDF		plot3D.pdf
PDF		RDRToolbox-003.pdf
PDF		SwissRoll.pdf
PDF		Reference Manual

Details

biocViews	Dimension, DimensionReduction, FeatureExtraction, Visualization, ClusterValidation, Microarray
Depends	R (>= 2.9.0), rgl
Imports	graphics, grDevices, methods, stats, MASS, rgl
Suggests	golubEsets
System Requirements
License	GPL (>= 2)
URL
Depends On Me
Imports Me
Suggests Me
Version	1.4.0
Since	Bioconductor 2.7 (R-2.12)

Package Downloads

Package Source	RDRToolbox_1.4.0.tar.gz
Windows Binary	RDRToolbox_1.4.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	RDRToolbox_1.4.0.tgz
Package Downloads Report	Download Stats

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