OrderedList

Similarities of Ordered Gene Lists

Bioconductor version: 2.9

Detection of similarities between ordered lists of genes. Thereby, either simple lists can be compared or gene expression data can be used to deduce the lists. Significance of similarities is evaluated by shuffling lists or by resampling in microarray data, respectively.

Author: Xinan Yang, Stefanie Scheid, Claudio Lottaz

Maintainer: Claudio Lottaz <Claudio.Lottaz at klinik.uni-regensburg.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("OrderedList")

To cite this package in a publication, start R and enter:

    citation("OrderedList")

Documentation

PDF		bcb_logo.pdf
PDF	R Script	Similarities of Ordered Gene Lists
PDF		Reference Manual

Details

biocViews	Microarray, DifferentialExpression, MultipleComparisons
Depends	R (>= 2.1.0), Biobase(>= 1.5.12), twilight(>= 1.9.2), methods
Imports	Biobase, graphics, methods, stats, twilight
Suggests
System Requirements
License	GPL (>= 2)
URL	http://compdiag.molgen.mpg.de/software/index.shtml
Depends On Me
Imports Me
Suggests Me
Version	1.26.0
Since	Bioconductor 1.8 (R-2.3)

Package Downloads

Package Source	OrderedList_1.26.0.tar.gz
Windows Binary	OrderedList_1.26.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	OrderedList_1.26.0.tgz
Package Downloads Report	Download Stats

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