Motif Identification and Validation

Bioconductor version: 2.9

This package makes use of STAMP for comparing a set of motifs to a given database (e.g. JASPAR). It can also be used to visualize motifs, motif distributions, modules and filter motifs.

Author: Eloi Mercier, Raphael Gottardo

Maintainer: Eloi Mercier <emercier at>, Raphael Gottardo <raphael.gottardo at>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script The MotIV users guide
PDF   Reference Manual


biocViews Microarray, ChIPchip, ChIPSeq, GenomicSequence
Imports graphics, grid, IRanges, lattice, methods, rGADEM, stats, utils
Suggests rtracklayer
System Requirements
License GPL 2
Depends On Me
Imports Me
Suggests Me
Version 1.8.1
Since Bioconductor 2.6 (R-2.11)

Package Downloads

Package Source MotIV_1.8.1.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) binary MotIV_1.8.1.tgz
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Fred Hutchinson Cancer Research Center