MiChip
MiChip Parsing and Summarizing Functions
Bioconductor version: 2.9
This package takes the MiChip miRNA microarray .grp scanner output files and parses these out, providing summary and plotting functions to analyse MiChip hybridizations. A set of hybridizations is packaged into an ExpressionSet allowing it to be used by other BioConductor packages.
Author: Jonathon Blake <blake at embl.de>
Maintainer: Jonathon Blake <blake at embl.de>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("MiChip")
To cite this package in a publication, start R and enter:
citation("MiChip")
Documentation
| R Script | MiChip miRNA Microarray Processing | |
| Reference Manual |
Details
| biocViews | Microarray, preprocessing |
| Depends | R (>= 2.3.0), Biobase |
| Imports | Biobase |
| Suggests | |
| System Requirements | |
| License | GPL (>= 2) |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.8.0 |
| Since | Bioconductor 2.5 (R-2.10) |
Package Downloads
| Package Source | MiChip_1.8.0.tar.gz |
| Windows Binary | MiChip_1.8.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | MiChip_1.8.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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