HELP
Tools for HELP data analysis
Bioconductor version: 2.9
The package contains a modular pipeline for analysis of HELP microarray data, and includes graphical and mathematical tools with more general applications
Author: Reid F. Thompson <rthompso at aecom.yu.edu>, John M. Greally <jgreally at aecom.yu.edu>, with contributions from Mark Reimers <mreimers at vcu.edu>
Maintainer: Reid F. Thompson <rthompso at aecom.yu.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("HELP")
To cite this package in a publication, start R and enter:
citation("HELP")
Documentation
| R Script | 1. Primer | |
| Reference Manual |
Details
| biocViews | CpGIsland, DNAMethylation, Microarray, TwoChannel, DataImport, QualityControl, Preprocessing, Visualization |
| Depends | R (>= 2.8.0), stats, graphics, grDevices, Biobase, methods |
| Imports | |
| Suggests | |
| System Requirements | |
| License | GPL (>= 2) |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.12.0 |
| Since | Bioconductor 2.3 (R-2.8) |
Package Downloads
| Package Source | HELP_1.12.0.tar.gz |
| Windows Binary | HELP_1.12.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | HELP_1.12.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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