GeneExpressionSignature

Gene Expression Signature based Similarity Metric

Bioconductor version: 2.9

This package gives the implementations of the gene expression signature and its distance to each. Gene expression signature is represented as a list of genes whose expression is correlated with a biological state of interest. And its distance is defined using a nonparametric, rank-based pattern-matching strategy based on the Kolmogorov-Smirnov statistic. Gene expression signature and its distance can be used to detect similarities among the signatures of drugs, diseases, and biological states of interest.

Author: Yang Cao

Maintainer: Yang Cao <amms.yang.cao at gmail.com>, Fei Li <pittacus at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GeneExpressionSignature")

To cite this package in a publication, start R and enter:

    citation("GeneExpressionSignature")

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