GEOquery

Get data from NCBI Gene Expression Omnibus (GEO)

Bioconductor version: 2.9

The NCBI Gene Expression Omnibus (GEO) is a public repository of microarray data. Given the rich and varied nature of this resource, it is only natural to want to apply BioConductor tools to these data. GEOquery is the bridge between GEO and BioConductor.

Author: Sean Davis <sdavis2 at mail.nih.gov>

Maintainer: Sean Davis <sdavis2 at mail.nih.gov>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GEOquery")

To cite this package in a publication, start R and enter:

    citation("GEOquery")

Documentation

PDF	R Script	GEOquery
PDF		Reference Manual
Text		NEWS

Details

biocViews	Microarray, DataImport, OneChannel, TwoChannel, SAGE
Depends	methods, Biobase
Imports	XML, RCurl
Suggests	limma, RUnit
System Requirements
License	GPL-2
URL	http://watson.nci.nih.gov/~sdavis
Depends On Me	dyebiasexamples, GEOmetadb
Imports Me	BeadArrayUseCases, SRAdb
Suggests Me	dyebias, PGSEA
Version	2.21.9
Since	Bioconductor 1.8 (R-2.3)

Package Downloads

Package Source	GEOquery_2.21.9.tar.gz
Windows Binary	GEOquery_2.21.9.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	GEOquery_2.21.9.tgz
Package Downloads Report	Download Stats

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