ExpressionView

Visualize biclusters identified in gene expression data

Bioconductor version: 2.9

ExpressionView visualizes possibly overlapping biclusters in a gene expression matrix. It can use the result of the ISA method (eisa package) or the algorithms in the biclust package or others. The viewer itself was developed using Adobe Flex and runs in a flash-enabled web browser.

Author: Andreas Luscher <andreas.luescher at a3.epfl.ch>

Maintainer: Gabor Csardi <csardi.gabor at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ExpressionView")

To cite this package in a publication, start R and enter:

    citation("ExpressionView")

Documentation

PDF	R Script	ExpressionView
PDF	R Script	ExpressionView file format
PDF	R Script	How the ordering algorithm works
PDF		Reference Manual

Details

biocViews	Classification, Visualization, Microarray, GeneExpression
Depends	caTools, bitops
Imports	methods, isa2, eisa, GO.db, KEGG.db, AnnotationDbi
Suggests	ALL, hgu95av2.db, biclust, GO.db, KEGG.db, AnnotationDbi, affy
System Requirements
License	GPL (>= 2)
URL
Depends On Me
Imports Me
Suggests Me
Version	1.6.0
Since	Bioconductor 2.6 (R-2.11)

Package Downloads

Package Source	ExpressionView_1.6.0.tar.gz
Windows Binary	ExpressionView_1.6.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	ExpressionView_1.6.0.tgz
Package Downloads Report	Download Stats

Workflows »

Common Bioconductor workflows include:

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Hosting provided by Fred Hutchinson Cancer Research Center