ExiMiR
R functions for the normalization of Exiqon miRNA array data
Bioconductor version: 2.9
This package contains functions for reading raw data in ImaGene TXT format obtained from Exiqon miRCURY LNA arrays, annotating them with appropriate GAL files, and normalizing them using a spike-in probe-based method.
Author: Sylvain Gubian <DL.RSupport at pmi.com>, Alain Sewer <DL.RSupport at pmi.com>, PMP SA
Maintainer: Sylvain Gubian <DL.RSupport at pmi.com>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("ExiMiR")
To cite this package in a publication, start R and enter:
citation("ExiMiR")
Documentation
| R Script | Description of ExiMiR | |
| Reference Manual |
Details
| biocViews | Microarray, OneChannel, DualChannel, Preprocessing, GeneExpression, Transcription |
| Depends | R (>= 2.8.0), Biobase(>= 2.5.5), affy(>= 1.26.1) |
| Imports | affyio(>= 1.13.3), Biobase(>= 2.5.5), preprocessCore(>= 1.10.0) |
| Suggests | |
| System Requirements | |
| License | GPL-2 |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.2.0 |
| Since | Bioconductor 2.8 (R-2.13) |
Package Downloads
| Package Source | ExiMiR_1.2.0.tar.gz |
| Windows Binary | ExiMiR_1.2.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | ExiMiR_1.2.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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