Differential Binding Analysis of ChIP-Seq peak data

Bioconductor version: 2.9

Compute differentially bound sites from multiple ChIP-seq experiments using affinity (quantitative) data. Also enables occupancy (overlap) analysis and plotting functions.

Author: Rory Stark<rory.stark at cancer.org.uk>, Gordon Brown <gordon.brown at cancer.org.uk>

Maintainer: Rory Stark<rory.stark at cancer.org.uk>

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PDF R Script DiffBind User's Guide
PDF   Reference Manual
Text   NEWS


biocViews Bioinformatics, HighThroughputSequencing, ChIPseq
Depends R (>= 2.14.0)
Imports RColorBrewer, amap, edgeR(>= 2.3.58), gplots, limma, DESeq, grDevices, stats, utils, IRanges, zlibbioc
Suggests DESeq
System Requirements
License Artistic-2.0
Depends On Me
Imports Me
Suggests Me
Version 1.0.9
Since Bioconductor 2.9 (R-2.14)

Package Downloads

Package Source DiffBind_1.0.9.tar.gz
Windows Binary DiffBind_1.0.9.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary DiffBind_1.0.9.tgz
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