Bioconductor version: 2.9
A general framework for the simulation of ChIP-seq data. Although currently focused on nucleosome positioning the package is designed to support different types of experiments.
Author: Peter Humburg
Maintainer: Peter Humburg <Peter.Humburg at well.ox.ac.uk>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("ChIPsim")
To cite this package in a publication, start R and enter:
citation("ChIPsim")
R Script | Simulating ChIP-seq experiments | |
Reference Manual |
biocViews | Infrastructure, Bioinformatics, ChIPseq |
Depends | Biostrings |
Imports | IRanges, Biostrings, ShortRead, graphics, methods, stats, utils |
Suggests | actuar, zoo |
System Requirements | |
License | GPL (>= 2) |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Version | 1.8.0 |
Since | Bioconductor 2.5 (R-2.10) |
Package Source | ChIPsim_1.8.0.tar.gz |
Windows Binary | ChIPsim_1.8.0.zip (32- & 64-bit) |
MacOS 10.5 (Leopard) binary | ChIPsim_1.8.0.tgz |
Package Downloads Report | Download Stats |
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