ArrayExpress High Throughput Sequencing Processing Pipeline

Bioconductor version: 2.9

RNA-Seq processing pipeline for public ArrayExpress experiments or local datasets

Author: Angela Goncalves, Andrew Tikhonov

Maintainer: Angela Goncalves <filimon at>, Andrew Tikhonov <andrew at>

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PDF R Script ArrayExpressHTS: RNA-Seq Pipeline for transcription profiling experiments
PDF   Reference Manual
Text   NEWS


biocViews RNAseq, Sequencing, HighThroughputSequencing
Depends sampling, Rsamtools(>= 1.3.32), snow
Imports Biobase, Biostrings, DESeq, GenomicRanges, Hmisc, IRanges, R2HTML, RColorBrewer, Rsamtools, ShortRead, XML, biomaRt, edgeR, grDevices, graphics, methods, rJava, stats, svMisc, utils
System Requirements
License Artistic License 2.0
Depends On Me
Imports Me
Suggests Me
Version 1.4.0
Since Bioconductor 2.8 (R-2.13)

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Package Source ArrayExpressHTS_1.4.0.tar.gz
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MacOS 10.5 (Leopard) binary ArrayExpressHTS_1.4.0.tgz
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