Isotopic peak pattern deconvolution for Protein Mass Spectrometry by template matching


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Documentation for package ‘IPPD’ version 1.2.0

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IPPD-package Peak pattern deconvolution for Protein Mass Spectrometry by non-negative ls/lad template matching
calculatebasis.emg Internal functions
calculatebasis.gaussian Internal functions
calculatedenoisingbasis.emg Internal functions
calculatedenoisingbasis.gaussian Internal functions
dalpha Internal functions
determinemode Internal functions
dmu Internal functions
dsigma Internal functions
EMG Internal functions
erfc Internal functions
fit.combine Internal functions
fit.EMG Internal functions
fit.gauss Internal functions
fitModelParameters Peak parameter estimation
fitModelParameters-method Peak parameter estimation
fitModelParameters-methods Peak parameter estimation
formulacoef2function Internal functions
gaussfun Internal functions
getpeakheights Internal functions
getPeaklist Peak pattern extraction by non-negative ls/lad template matching
getPeaklist-method Peak pattern extraction by non-negative ls/lad template matching
getPeaklist-methods Peak pattern extraction by non-negative ls/lad template matching
grad Internal functions
grad.combine Internal functions
gridsearch Internal functions
intermediate.gaussian Internal functions
intermediateemg Internal functions
linesearch Internal functions
linesearchlad Internal functions
localnoise Internal functions
modelfit "Modelfit"
modelfit-class "Modelfit"
myo500 Myoglobine dataset
nnladlogbarrier Internal functions
nnlslogbarrier Internal functions
objective Internal functions
objective.combine Internal functions
P1 Internal functions
P2 Internal functions
P3 Internal functions
P3prime Internal functions
peakdetect Internal functions
peaklist "Peaklist"
peaklist-class "Peaklist"
postprocess.emg Internal functions
postprocess.gaussian Internal functions
show-method "Modelfit"
show-method "Peaklist"
simplepeakdetect Internal functions
tableaveragine Internal functions
threshold "Peaklist"
threshold-method "Peaklist"
toyspectrum Simulated protein mass spectrum
toyspectrumsolution Simulated protein mass spectrum
visualize "Peaklist"
visualize-method "Modelfit"
visualize-method "Peaklist"