Disease Ontology Semantic and Enrichment analysis


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Documentation for package ‘DOSE’ version 1.0.0

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DOSE-package Disease Ontology Semantic and Enrichment analysis
DO2EG Map DO term to entrez gene IDs
DOParams Methods for calculating semantic similarity
DOParams-class Class "DOParams"
DOSE Disease Ontology Semantic and Enrichment analysis
EG2DO Map entrez gene ID to DO terms
enrichDO DO Enrichment Analysis of a gene set.
enrichDOResult-class Class "enrichDOResult"
IC Information content of DO terms
Info_Contents_human_DO Information content of DO terms
show-method Class "enrichDOResult"
sim Methods for calculating semantic similarity
sim-method Methods for calculating semantic similarity
sim-methods Methods for calculating semantic similarity
summary-method Class "enrichDOResult"