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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("simpleaffy")
In most cases, you don't need to download the package archive at all.
simpleaffy
|
This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see simpleaffy.
Very simple high level analysis of Affymetrix data
Bioconductor version: 2.8
Provides high level functions for reading Affy .CEL files, phenotypic data, and then computing simple things with it, such as t-tests, fold changes and the like. Makes heavy use of the affy library. Also has some basic scatter plot functions and mechanisms for generating high resolution journal figures...
Author: Crispin J Miller
Maintainer: Crispin Miller <cmiller at picr.man.ac.uk>
Citation (from within R,
enter citation("simpleaffy")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("simpleaffy")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("simpleaffy")
| QCandSimpleaffy.pdf | ||
| simpleAffy.pdf | ||
| Reference Manual |
Details
| biocViews | Annotation, Bioinformatics, DataImport, DifferentialExpression, Microarray, OneChannel, Preprocessing, QualityControl, ReportWriting, Software, Transcription, Visualization |
| Version | 2.28.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 11 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.0.0), affy, genefilter, Biobase, methods, utils, gcrma |
| Imports | affy, Biobase, gcrma, genefilter, graphics, grDevices, methods, stats, utils |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | http://www.bioconductor.org http://bioinformatics.picr.man.ac.uk/simpleaffy/ |
| Depends On Me | yaqcaffy |
| Imports Me | affyQCReport, arrayMvout, arrayQualityMetrics |
| Suggests Me | AffyExpress, ArrayTools |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | simpleaffy_2.28.0.tar.gz |
| Windows Binary | simpleaffy_2.28.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/simpleaffy/tree/release-2.8 |
| Package Short Url | http://bioconductor.org/packages/simpleaffy/ |
| Package Downloads Report | Download Stats |
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