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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("phenoDist")
In most cases, you don't need to download the package archive at all.
phenoDist
|
This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see phenoDist.
Phenotypic distance measures
Bioconductor version: 2.8
PhenoDist is designed for measuring phenotypic distance in image-based high-throughput screening, in order to identify strong phenotypes and to group treatments into functional clusters.
Author: Xian Zhang, Gregoire Pau, Wolfgang Huber, Michael Boutros
Maintainer: Xian Zhang <x.zhang at dkfz.de>
Citation (from within R,
enter citation("phenoDist")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("phenoDist")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("phenoDist")
| phenoDist.pdf | ||
| Reference Manual |
Details
| biocViews | Bioinformatics, CellBasedAssays, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (5 years) |
| License | LGPL-2.1 |
| Depends | R (>= 2.9.0), imageHTS, e1071 |
| Imports | |
| LinkingTo | |
| Suggests | GOstats, MASS |
| SystemRequirements | |
| Enhances | |
| URL | http://www.dkfz.de/signaling http://www.embl.de/research/units/genome_biology/huber/ |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | phenoDist_1.0.0.tar.gz |
| Windows Binary | phenoDist_1.0.0.zip |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/phenoDist/tree/release-2.8 |
| Package Short Url | http://bioconductor.org/packages/phenoDist/ |
| Package Downloads Report | Download Stats |
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