To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("goseq")

In most cases, you don't need to download the package archive at all.

goseq

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see goseq.

Gene Ontology analyser for RNA-seq and other length biased data

Bioconductor version: 2.8

Detects Gene Ontology and/or other user defined categories which are over/under represented in RNA-seq data

Author: Matthew Young

Maintainer: Matthew Young <myoung at wehi.edu.au>

Citation (from within R, enter citation("goseq")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("goseq")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("goseq")

PDF		goseq.pdf
PDF		Reference Manual

biocViews	GO, GeneExpression, HighThroughputSequencingData, RNAseq, Software, Transcription
Version	1.4.0
In Bioconductor since	BioC 2.6 (R-2.11) (6 years)
License	LGPL (>= 2)
Depends	R (>= 2.11.0), BiasedUrn, geneLenDataBase
Imports	mgcv, graphics, stats, utils, AnnotationDbi
LinkingTo
Suggests	GO.db, edgeR, org.Hs.eg.db
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	goseq_1.4.0.tar.gz
Windows Binary	goseq_1.4.0.zip
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/goseq/tree/release-2.8
Package Short Url	http://bioconductor.org/packages/goseq/
Package Downloads Report	Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Please read the posting guide. Post questions about Bioconductor to one of the following locations: