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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cosmoGUI")
In most cases, you don't need to download the package archive at all.
cosmoGUI
|
This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see cosmoGUI.
GUI for constructing constraint sets used by the cosmo package
Bioconductor version: 2.8
cosmoGUI allows the user to interactively define constraint sets that can be used by the cosmo package to supervise the search for shared motifs in a set of DNA sequences. The constraints can be either adapted from a set of commonly used templates or defined from scratch.
Author: Fabian Gallusser, Oliver Bembom, and Sandrine Dudoit
Maintainer: Oliver Bembom <oliver.bembom at gmail.com>
Citation (from within R,
enter citation("cosmoGUI")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cosmoGUI")
Documentation
| Reference Manual |
Details
| biocViews | GUI, SequenceMatching, Software |
| Version | 1.18.0 |
| In Bioconductor since | BioC 2.0 (R-2.5) (9 years) |
| License | LGPL (>= 2) |
| Depends | tkWidgets, cosmo |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | http://cosmoweb.berkeley.edu/intro.html http://www.bepress.com/ucbbiostat/paper209/ |
| Depends On Me | |
| Imports Me | |
| Suggests Me | cosmo |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | cosmoGUI_1.18.0.tar.gz |
| Windows Binary | cosmoGUI_1.18.0.zip |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/cosmoGUI/tree/release-2.8 |
| Package Short Url | http://bioconductor.org/packages/cosmoGUI/ |
| Package Downloads Report | Download Stats |
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