To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("chopsticks")

In most cases, you don't need to download the package archive at all.

chopsticks

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see chopsticks.

The snp.matrix and X.snp.matrix classes

Bioconductor version: 2.8

Implements classes and methods for large-scale SNP association studies

Author: Hin-Tak Leung <htl10 at users.sourceforge.net>

Maintainer: Hin-Tak Leung <htl10 at users.sourceforge.net>

Citation (from within R, enter citation("chopsticks")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("chopsticks")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chopsticks")

PDF		chopsticks-vignette.pdf
PDF		clustering-comparison-vignette.pdf
PDF		imputation-vignette.pdf
PDF		pca-vignette.pdf
PDF		snpMatrix-paper-HumanHeridity2007.pdf
PDF		tdt-vignette.pdf
PDF		Reference Manual

biocViews	GeneticVariability, Microarray, SNP, Software
Version	1.16.0
In Bioconductor since	BioC 2.8 (R-2.13) (5 years)
License	GPL-3
Depends	R (>= 2.3.0), survival, methods
Imports	graphics, grDevices, methods, stats, survival, utils
LinkingTo
Suggests	hexbin
SystemRequirements
Enhances
URL	http://sourceforge.net/projects/outmodedbonsai/
Depends On Me
Imports Me
Suggests Me	ind1KG
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	chopsticks_1.16.0.tar.gz
Windows Binary	chopsticks_1.16.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/chopsticks/tree/release-2.8
Package Short Url	http://bioconductor.org/packages/chopsticks/
Package Downloads Report	Download Stats