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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("affyILM")
In most cases, you don't need to download the package archive at all.
affyILM
|
This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see affyILM.
Linear Model of background subtraction and the Langmuir isotherm
Bioconductor version: 2.8
affyILM is a preprocessing tool which estimates gene expression levels for Affymetrix Gene Chips. Input from physical chemistry is employed to first background subtract intensities before calculating concentrations on behalf of the Langmuir model.
Author: K. Myriam Kroll, Fabrice Berger, Gerard Barkema, Enrico Carlon
Maintainer: Myriam Kroll and Fabrice Berger <affyILM at itf.fys.kuleuven.be>
Citation (from within R,
enter citation("affyILM")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("affyILM")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("affyILM")
| affyILM.pdf | ||
| Reference Manual |
Details
| biocViews | Microarray, OneChannel, Preprocessing, Software |
| Version | 1.4.0 |
| In Bioconductor since | BioC 2.6 (R-2.11) (6 years) |
| License | GPL-3 |
| Depends | R (>= 2.10.0), methods |
| Imports | affxparser(>= 1.16.0), gcrma, affy, graphics, methods |
| LinkingTo | |
| Suggests | AffymetrixDataTestFiles |
| SystemRequirements | Gnu Scientific Library version >= 1.8 |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | affyILM_1.4.0.tar.gz |
| Windows Binary | affyILM_1.4.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/affyILM/tree/release-2.8 |
| Package Short Url | http://bioconductor.org/packages/affyILM/ |
| Package Downloads Report | Download Stats |
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