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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TDARACNE")
In most cases, you don't need to download the package archive at all.
TDARACNE
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This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see TDARACNE.
Network reverse engineering from time course data.
Bioconductor version: 2.8
To infer gene networks from time-series measurements is a current challenge into bioinformatics research area. In order to detect dependencies between genes at different time delays, we propose an approach to infer gene regulatory networks from time-series measurements starting from a well known algorithm based on information theory. The proposed algorithm is expected to be useful in reconstruction of small biological directed networks from time course data.
Author: Zoppoli P.,Morganella S., Ceccarelli M.
Maintainer: Zoppoli Pietro <zoppoli.pietro at gmail.com>
Citation (from within R,
enter citation("TDARACNE")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TDARACNE")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TDARACNE")
| TDARACNE.pdf | ||
| Reference Manual |
Details
| biocViews | Microarray, Software, TimeCourse |
| Version | 1.2.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (5 years) |
| License | GPL-2 |
| Depends | GenKern, Rgraphviz, Biobase |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | TDARACNE_1.2.0.tar.gz |
| Windows Binary | TDARACNE_1.2.0.zip |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/TDARACNE/tree/release-2.8 |
| Package Short Url | http://bioconductor.org/packages/TDARACNE/ |
| Package Downloads Report | Download Stats |
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