To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rolexa")

In most cases, you don't need to download the package archive at all.

Rolexa

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see Rolexa.

Statistical analysis of Solexa sequencing data

Bioconductor version: 2.8

Provides probabilistic base calling, quality checks and diagnostic plots for Solexa sequencing data

Author: Jacques Rougemont, Arnaud Amzallag, Christian Iseli, Laurent Farinelli, Ioannis Xenarios, Felix Naef

Maintainer: Jacques Rougemont <jacques.rougemont at epfl.ch>

Citation (from within R, enter citation("Rolexa")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rolexa")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rolexa")

PDF		Rolexa-vignette.pdf
PDF		Reference Manual

biocViews	DataImport, Preprocessing, QualityControl, Sequencing, Software
Version	1.8.0
In Bioconductor since	BioC 2.5 (R-2.10) (6.5 years)
License	GPL-2
Depends	R (>= 2.9.0), mclust, graphics, grDevices, methods, ShortRead
Imports	Biostrings, graphics, grDevices, IRanges, methods, ShortRead, stats
LinkingTo
Suggests
SystemRequirements
Enhances	fork
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	Rolexa_1.8.0.tar.gz
Windows Binary	Rolexa_1.8.0.zip
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/Rolexa/tree/release-2.8
Package Short Url	http://bioconductor.org/packages/Rolexa/
Package Downloads Report	Download Stats

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