To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RDRToolbox")

In most cases, you don't need to download the package archive at all.

RDRToolbox

   

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see RDRToolbox.

A package for nonlinear dimension reduction with Isomap and LLE.

Bioconductor version: 2.8

A package for nonlinear dimension reduction using the Isomap and LLE algorithm. It also includes a routine for computing the Davis-Bouldin-Index for cluster validation, a plotting tool and a data generator for microarray gene expression data and for the Swiss Roll dataset.

Author: Christoph Bartenhagen

Maintainer: Christoph Bartenhagen <christoph.bartenhagen at ukmuenster.de>

Citation (from within R, enter citation("RDRToolbox")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RDRToolbox")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RDRToolbox")

 

PDF plot3D.pdf
PDF RDRToolbox-003.pdf
PDF SwissRoll.pdf
PDF vignette.pdf
PDF   Reference Manual

Details

biocViews ClusterValidation, Dimension, DimensionReduction, FeatureExtraction, Microarray, Software, Visualization
Version 1.2.0
In Bioconductor since BioC 2.7 (R-2.12) (5.5 years)
License GPL (>= 2)
Depends R (>= 2.9.0), rgl
Imports graphics, grDevices, methods, stats, MASS, rgl
LinkingTo
Suggests golubEsets
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source RDRToolbox_1.2.0.tar.gz
Windows Binary RDRToolbox_1.2.0.zip
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/RDRToolbox/tree/release-2.8
Package Short Url http://bioconductor.org/packages/RDRToolbox/
Package Downloads Report Download Stats

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