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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RDRToolbox")
In most cases, you don't need to download the package archive at all.
RDRToolbox
|
This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see RDRToolbox.
A package for nonlinear dimension reduction with Isomap and LLE.
Bioconductor version: 2.8
A package for nonlinear dimension reduction using the Isomap and LLE algorithm. It also includes a routine for computing the Davis-Bouldin-Index for cluster validation, a plotting tool and a data generator for microarray gene expression data and for the Swiss Roll dataset.
Author: Christoph Bartenhagen
Maintainer: Christoph Bartenhagen <christoph.bartenhagen at ukmuenster.de>
Citation (from within R,
enter citation("RDRToolbox")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RDRToolbox")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RDRToolbox")
| plot3D.pdf | ||
| RDRToolbox-003.pdf | ||
| SwissRoll.pdf | ||
| vignette.pdf | ||
| Reference Manual |
Details
| biocViews | ClusterValidation, Dimension, DimensionReduction, FeatureExtraction, Microarray, Software, Visualization |
| Version | 1.2.0 |
| In Bioconductor since | BioC 2.7 (R-2.12) (5.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.9.0), rgl |
| Imports | graphics, grDevices, methods, stats, MASS, rgl |
| LinkingTo | |
| Suggests | golubEsets |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | RDRToolbox_1.2.0.tar.gz |
| Windows Binary | RDRToolbox_1.2.0.zip |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/RDRToolbox/tree/release-2.8 |
| Package Short Url | http://bioconductor.org/packages/RDRToolbox/ |
| Package Downloads Report | Download Stats |
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