To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MotIV")

In most cases, you don't need to download the package archive at all.

MotIV

   

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see MotIV.

Motif Identification and Validation

Bioconductor version: 2.8

This package makes use of STAMP for comparing a set of motifs to a given database (e.g. JASPAR). It can also be used to visualize motifs, motif distributions, modules and filter motifs.

Author: Eloi Mercier, Raphael Gottardo

Maintainer: Eloi Mercier <emercier at chibi.ubc.ca>, Raphael Gottardo <raphael.gottardo at ircm.qc.ca>

Citation (from within R, enter citation("MotIV")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MotIV")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MotIV")

 

PDF MotIV.pdf
PDF   Reference Manual

Details

biocViews ChIPSeq, ChIPchip, GenomicSequence, Microarray, Software
Version 1.6.0
In Bioconductor since BioC 2.6 (R-2.11) (6 years)
License GPL 2
Depends
Imports graphics, grid, IRanges, lattice, methods, rGADEM, stats, utils
LinkingTo
Suggests rtracklayer
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source MotIV_1.6.0.tar.gz
Windows Binary MotIV_1.6.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/MotIV/tree/release-2.8
Package Short Url http://bioconductor.org/packages/MotIV/
Package Downloads Report Download Stats

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