To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MSnbase")

In most cases, you don't need to download the package archive at all.

MSnbase

   

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see MSnbase.

MSnbase: Base Functions and Classes for MS-based Proteomics

Bioconductor version: 2.8

Basic plotting, data manipulation and processing of MS-based Proteomics data

Author: Laurent Gatto

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>

Citation (from within R, enter citation("MSnbase")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MSnbase")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MSnbase")

 

PDF MSnbase-demo.pdf
PDF MSnbase-development.pdf
PDF   Reference Manual

Details

biocViews Bioinformatics, Infrastructure, MassSpectrometry, Proteomics, Software
Version 1.0.7
In Bioconductor since BioC 2.8 (R-2.13) (5 years)
License Artistic-2.0
Depends Biobase(>= 2.11.0), methods, ggplot2
Imports plyr, graphics, xcms, IRanges
LinkingTo
Suggests testthat, zoo, vsn, pgfSweave
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source MSnbase_1.0.7.tar.gz
Windows Binary MSnbase_1.0.7.zip
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/MSnbase/tree/release-2.8
Package Short Url http://bioconductor.org/packages/MSnbase/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Fred Hutchinson Cancer Research Center