- Home
- Bioconductor 2.8
- Software Packages
- CRImage
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CRImage")
In most cases, you don't need to download the package archive at all.
CRImage
|
This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see CRImage.
CRImage a package to classify cells and calculate tumour cellularity
Bioconductor version: 2.8
CRImage provides functionality to process and analyze images, in particular to classify cells in biological images. Furthermore, in the context of tumor images, it provides functionality to calculate tumour cellularity.
Author: Henrik Failmezger <failmezger at cip.ifi.lmu.de>, Yinyin Yuan <Yinyin.Yuan at cancer.org.uk>, Oscar Rueda <oscar.rueda at cancer.org.uk>, Florian Markowetz <Florian.Markowetz at cancer.org.uk>
Maintainer: Henrik Failmezger <failmezger at cip.ifi.lmu.de>, Yinyin Yuan <Yinyin.Yuan at cancer.org.uk>
Citation (from within R,
enter citation("CRImage")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CRImage")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CRImage")
| cellularity2.pdf | ||
| CRImage.pdf | ||
| labeledImage.pdf | ||
| Reference Manual |
Details
| biocViews | CellBiology, Classification, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 2.7 (R-2.12) (5.5 years) |
| License | Artistic-2.0 |
| Depends | EBImage |
| Imports | MASS, e1071, foreach |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | CRImage_1.2.0.tar.gz |
| Windows Binary | CRImage_1.2.0.zip |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/CRImage/tree/release-2.8 |
| Package Short Url | http://bioconductor.org/packages/CRImage/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
