| Package | Maintainer | Title |
|---|---|---|
| beadarraySNP | Jan Oosting | Normalization and reporting of Illumina SNP bead arrays |
| GGBase | Vince Carey | infrastructure for genetics of gene expression (c) 2008 VJ Carey |
| GGtools | Vince Carey | software and data for genetical genomics (c) 2006 VJ Carey |
| logicFS | Holger Schwender | Identification of SNP Interactions |
| RLMM | Nusrat Rabbee | A Genotype Calling Algorithm for Affymetrix SNP Arrays |
| RSNPper | VJ Carey | interface to chip.org::SNPper for SNP-related data |
| siggenes | Holger Schwender | Multiple testing using SAM and Efron's empirical Bayes approaches |
| SNPchip | Robert Scharpf | Classes and Methods for high throughput SNP chip data |
| snpMatrix | David Clayton | The snp.matrix and X.snp.matrix classes |
| VanillaICE | Robert Scharpf | Methods for fitting Hidden Markov Models to SNP chip data |