| Package | Maintainer | Title |
|---|---|---|
| affycoretools | James W. MacDonald | Functions useful for those doing repetitive analyses with Affymetrix GeneChips. |
| AffyExpress | Xuejun Arthur Li | Affymetrix Quality Assessment and Analysis Tool |
| annaffy | Colin A. Smith | Annotation tools for Affymetrix biological metadata |
| arrayQualityMetrics | Audrey Kauffmann | Quality metrics on microarray data sets |
| DynDoc | Biocore Team c/o BioC user list | Dynamic document tools |
| exonmap | Crispin Miller | High level analysis of Affymetrix exon array data |
| simpleaffy | Crispin Miller | Very simple high level analysis of Affymetrix data |